Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0     10        0   28.0
Qui1     Qui    25.0      4        0   12.5
Qui2     Qui     0.0      3        0   28.0
Qui3     Qui    33.3      6        0   27.0
Qui4     Qui    62.5      8        0   18.5
Rio1     Rio    14.3      7        0   33.0
Rio2     Rio    10.0     10        0   19.0
Rio3     Rio    28.6      7        0   28.5
Rio4     Rio     0.0     17        0   39.0