Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

33 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     67        0    4.3
Qui1     Qui    54.2    107        1    5.9
Qui2     Qui    62.3    159        1    8.8
Qui3     Qui    47.1    121        0    8.9
Qui4     Qui    35.5     93        1    7.5
Rio1     Rio     0.0    122        0    8.4
Rio2     Rio     0.0    169        1    7.8
Rio3     Rio     5.0    121        0    6.0
Rio4     Rio    11.8    127        0    6.9