Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 19 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     9.6     73        0    5.9
Qui1     Qui    91.9     62        1    5.6
Qui2     Qui    84.7    209        0   10.6
Qui3     Qui    53.1    177        0   10.1
Qui4     Qui    54.9    122        0    8.8
Rio1     Rio     2.2    139        0    8.6
Rio2     Rio     1.4     73        0    7.5
Rio3     Rio     0.9    107        0    6.2
Rio4     Rio     0.0     82        1    4.9