Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 54
  seen in >= 2 oysters: 17
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

18 CpGs in target; 13 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.5     80        0    5.6
Qui1     Qui     1.8     55        0    8.3
Qui2     Qui    21.8     55        0    6.9
Qui3     Qui    23.7     97        1    7.8
Qui4     Qui    12.9     85        0    6.5
Rio1     Rio    22.9     83        0    6.9
Rio2     Rio    48.2     85        1    7.7
Rio3     Rio    38.9     95        0    7.5
Rio4     Rio    22.1     68        0    7.1