Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    42027648 C>T  Pum=  Qui=0.25  Rio=0.895

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     10        0   10.0
Qui1     Qui    36.4     11        1   14.0
Qui2     Qui    16.7     12        1   21.0
Qui3     Qui    26.7     15        0   28.0
Qui4     Qui    50.0     10        0   18.0
Rio1     Rio     0.0     12        1   19.0
Rio2     Rio     0.0     12        1   21.0
Rio3     Rio     0.0      8        0   10.0
Rio4     Rio     8.3     12        1   15.0