Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 61
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    3956873 T>G  Pum=  Qui=0.6  Rio=0.1

42 CpGs in target; 17 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    11.6     86        0    3.7
Qui1     Qui     0.0     42        1    3.4
Qui2     Qui    24.6    167        1    8.7
Qui3     Qui    40.3    134        0    9.3
Qui4     Qui    28.4    183        0    9.1
Rio1     Rio     0.0    107        0    6.3
Rio2     Rio     1.0     97        0    6.3
Rio3     Rio     0.0     63        0    2.7
Rio4     Rio     0.0     97        0    5.7