Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 48
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 14 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    44.4    124        0    6.9
Qui1     Qui    10.3     58        0    2.9
Qui2     Qui    47.2    159        0    8.7
Qui3     Qui    27.4    219        0    9.9
Qui4     Qui    18.8    202        0   10.6
Rio1     Rio     0.5    183        0   10.0
Rio2     Rio     4.1     49        0    2.7
Rio3     Rio     1.1     88        0    4.1
Rio4     Rio     3.8    106        0    6.0