Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     29        1    9.4
Qui1     Qui    45.9     37        0    5.3
Qui2     Qui     0.0     24        0    3.1
Qui3     Qui     0.0     13        0    2.8
Qui4     Qui     0.0     10        0    1.6
Rio1     Rio     0.0     12        0    5.7
Rio2     Rio     0.0     23        0    4.6
Rio3     Rio     0.0     10        0    5.5
Rio4     Rio     0.0     20        0    6.3