Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 15
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

38 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.9     55        0    5.0
Qui1     Qui    22.6     84        0    4.5
Qui2     Qui    26.4     72        0    3.7
Qui3     Qui    29.1     55        0    5.3
Qui4     Qui    50.0     74        0    5.6
Rio1     Rio    47.1     68        0    5.8
Rio2     Rio    32.8     61        0    4.2
Rio3     Rio    55.8     52        0    4.1
Rio4     Rio    35.9     64        0    6.0