Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

40 CpGs in target; 25 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    31.5    108        1    5.8
Qui1     Qui    15.3    216        1    9.4
Qui2     Qui    21.1    280        0   11.9
Qui3     Qui    31.7    186        0    7.4
Qui4     Qui    19.7    152        0    6.1
Rio1     Rio    52.2    115        1    7.5
Rio2     Rio    58.2     91        0    5.7
Rio3     Rio    34.6    156        0    7.9
Rio4     Rio    35.3    224        0    9.8