Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 61
  seen in >= 2 oysters: 30
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    19528566 G>T  Pum=  Qui=0.25  Rio=0.75

14 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.1     48        1    5.6
Qui1     Qui    17.6    131        0   18.9
Qui2     Qui    15.4     91        1   16.4
Qui3     Qui     2.5     40        1    7.7
Qui4     Qui    14.4    111        1   16.8
Rio1     Rio     0.0     49        1    5.9
Rio2     Rio     0.0     64        1   11.3
Rio3     Rio     0.0     57        1    7.9
Rio4     Rio     0.0    109        1   15.2