Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.4     41        0   41.0
Qui1     Qui    16.0     25        0   27.0
Qui2     Qui    36.4     44        0   45.0
Qui3     Qui    22.2     27        0   27.0
Qui4     Qui    31.7     41        0   42.5
Rio1     Rio     0.0     11        0   12.0
Rio2     Rio     7.1     42        0   41.5
Rio3     Rio     3.6     28        0   29.0
Rio4     Rio     9.4     32        0   34.0