Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.6     32        0   41.0
Qui1     Qui    69.2     13        0   18.0
Qui2     Qui    84.2     19        0   23.5
Qui3     Qui    52.9     17        0   27.0
Qui4     Qui    57.1     14        0   17.0
Rio1     Rio    20.4     54        0   64.5
Rio2     Rio    32.4     34        0   46.0
Rio3     Rio    15.8     19        0   22.5
Rio4     Rio    36.0     25        0   32.0