Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    32.3     31        1   36.5
Qui1     Qui    71.4     14        0   16.0
Qui2     Qui    86.7     15        1   19.0
Qui3     Qui    47.1     17        1   24.5
Qui4     Qui    75.0      8        0   10.0
Rio1     Rio     3.6     55        1   58.0
Rio2     Rio    30.8     26        1   35.0
Rio3     Rio    18.8     16        0   18.0
Rio4     Rio    34.6     26        1   32.5