Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 63
  seen in >= 2 oysters: 26
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    1172239 G>A  Pum=0.667  Qui=0.278  Rio=0.784

23 CpGs in target; 22 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    43.5    464        1   36.6
Qui1     Qui    70.1    214        0   17.0
Qui2     Qui    74.6    244        1   20.0
Qui3     Qui    52.9    221        1   20.1
Qui4     Qui    65.6    180        0   13.5
Rio1     Rio    26.3    874        2   66.8
Rio2     Rio    37.7    461        1   32.5
Rio3     Rio    33.8    296        0   25.0
Rio4     Rio    37.1    337        2   25.4