Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    70.7     58        1   12.5
Qui1     Qui    52.2     23        1    8.8
Qui2     Qui     9.5     21        0    5.6
Qui3     Qui    31.8     44        1   10.1
Qui4     Qui    53.8     26        1    7.4
Rio1     Rio    76.9     26        1    9.6
Rio2     Rio    31.2     16        0    5.0
Rio3     Rio    66.7     18        0    6.6
Rio4     Rio    63.3     30        0    9.1