Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    73.3     30        0    5.3
Qui1     Qui    53.8     26        0    5.4
Qui2     Qui    34.6     26        0    6.5
Qui3     Qui    73.3     30        0    8.0
Qui4     Qui    54.1     37        0    5.9
Rio1     Rio    40.5     37        0    9.6
Rio2     Rio    67.9     28        0    7.9
Rio3     Rio    50.0     24        0    6.5
Rio4     Rio    86.5     37        0    6.8