Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 22 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    20.6     68        0    4.5
Qui1     Qui    49.0    100        0    7.8
Qui2     Qui    56.6    173        0    8.6
Qui3     Qui    39.6    164        0    6.9
Qui4     Qui    47.0    117        0    7.6
Rio1     Rio     3.7    162        0    8.0
Rio2     Rio     2.6    115        0    7.5
Rio3     Rio     0.0    103        0    4.4
Rio4     Rio     0.6    171        0    8.5