pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 62522035 C A True 0 0.0 0.25 False False 0.00/3 0.00/7 0.00/1 0.00/1 0.00/2 0.50/2 0.00/2 62522040 C A True 0 0.0 0.25 False False 0.00/3 0.00/7 0.00/1 0.00/2 0.00/2 0.50/2 0.00/2 62522041 C G True 0 0.0 0.25 False False 0.00/3 0.00/7 0.00/1 0.00/2 0.00/2 0.50/2 0.00/2 62522059 C G True 1 0.25 0.0 0.0 False False 0.25/4 0.00/7 0.00/1 0.00/3 0.00/2 0.00/2 0.00/1 0.00/2 62522062 C G True 1 0.25 0.0 0.167 False False 0.25/4 0.00/7 0.00/1 0.00/3 0.00/2 0.00/2 0.00/1 0.33/3 62522069 C G True 1 0.25 0.0 0.0 False False 0.25/4 0.00/7 0.00/2 0.00/3 0.00/2 0.00/2 0.00/1 0.00/4 62522073 C T True 2 0.6 1.0 False True 0.67/3 0.38/8 0.50/2 1.00/3 1.00/2 1.00/2 1.00/1 1.00/4 62522095 C T True 4 0.75 0.688 1.0 False True 0.75/4 0.50/8 0.50/2 1.00/4 1.00/2 1.00/3 1.00/1 1.00/4 62522101 A G True 9 0.429 0.436 0.714 False False 0.43/7 0.41/17 0.60/5 0.40/10 0.43/7 0.50/6 0.80/10 1.00/5 0.57/7 62522107 G A True 7 0.8 0.739 1.0 False True 0.80/5 0.78/9 1.00/3 0.67/6 0.60/5 1.00/3 1.00/8 1.00/5 1.00/4 62522111 T G True 9 0.5 0.465 0.714 False False 0.50/8 0.44/18 0.67/6 0.45/11 0.38/8 0.50/6 0.89/9 1.00/5 0.50/8 62522177 T C True 3 0.2 0.238 0.212 False False 0.20/10 0.21/14 0.11/9 0.40/10 0.22/9 0.29/7 0.12/8 0.00/5 0.31/13 62522246 C A True 0 0.9 1.0 False False 1.00/2 1.00/3 0.67/3 1.00/1 1.00/3 1.00/2 1.00/1 1.00/2 62522274 G A True 9 0.5 0.719 1.0 False True 0.50/8 0.71/7 0.78/9 0.80/10 0.50/6 1.00/6 1.00/6 1.00/5 1.00/11 62522281 G A True 9 0.5 0.719 1.0 False True 0.50/8 0.71/7 0.78/9 0.80/10 0.50/6 1.00/6 1.00/6 1.00/5 1.00/11 62522321 C A True 4 0.75 0.833 1.0 False False 0.75/4 0.83/6 0.67/3 1.00/2 0.86/7 1.00/2 1.00/1 1.00/1 1.00/4 62522337 C A True 4 0.833 1.0 False False 0.67/3 0.80/5 0.75/4 1.00/2 0.86/7 1.00/3 1.00/1 1.00/1 1.00/4 62522351 A G True 8 0.333 0.294 0.56 False False 0.33/12 0.11/9 0.40/5 0.50/8 0.25/12 0.40/5 0.75/8 0.75/4 0.38/8 62522360 G A True 4 0.333 0.5 1.0 True True 0.33/6 0.00/4 1.00/2 0.67/6 0.50/4 1.00/2 1.00/6 1.00/3 1.00/2 62522377 A T True 9 0.455 0.676 1.0 False False 0.45/11 0.38/8 0.83/6 0.70/10 0.77/13 1.00/5 1.00/7 1.00/4 1.00/4 62522378 G T True 2 0.167 0.438 1.0 True False 0.17/6 0.00/4 1.00/2 0.57/7 0.33/3 1.00/1 1.00/6 1.00/2 62522380 T A True 1 0.0 0.0 0.05 False False 0.00/11 0.00/8 0.00/6 0.00/10 0.00/13 0.00/4 0.00/8 0.25/4 0.00/4 62522381 A G True 1 0.0 0.0 0.05 False False 0.00/11 0.00/8 0.00/5 0.00/10 0.00/13 0.00/4 0.00/8 0.25/4 0.00/4 62522388 A G True 7 0.455 0.657 1.0 False False 0.45/11 0.38/8 0.80/5 0.67/9 0.77/13 1.00/3 1.00/8 1.00/4 1.00/3 62522390 T C True 7 0.455 0.629 0.944 False False 0.45/11 0.38/8 0.60/5 0.67/9 0.77/13 1.00/3 0.88/8 1.00/4 1.00/3 62522393 G A True 1 0.0 0.333 0.0 False True 0.00/6 0.00/4 0.00/1 0.60/5 0.50/2 0.00/6 0.00/1 62522398 G T True 2 0.167 0.417 1.0 False False 0.17/6 0.00/4 1.00/1 0.60/5 0.50/2 1.00/6 1.00/1 62522420 C T True 4 0.8 0.824 1.0 False True 0.80/5 0.50/2 0.75/4 1.00/3 0.88/8 1.00/2 1.00/2 1.00/3 1.00/4 62522423 A G True 2 0.0 0.129 0.389 False False 0.00/10 0.00/6 0.20/5 0.22/9 0.09/11 0.00/2 0.71/7 0.25/4 0.20/5 62522437 T A True 7 0.444 0.586 1.0 False False 0.44/9 0.25/4 0.75/4 0.44/9 0.75/12 1.00/2 1.00/7 1.00/3 1.00/5 62522450 A G True 1 0.1 0.154 0.294 False False 0.10/10 0.00/1 0.00/3 0.20/10 0.17/12 0.00/2 0.57/7 0.00/3 0.20/5 62522453 C A True 3 1.0 0.846 1.0 False False 1.00/4 1.00/3 0.67/3 0.86/7 1.00/2 1.00/3 1.00/3 1.00/4 62522460 G A True 4 0.25 0.333 1.0 False True 0.25/4 0.00/1 0.29/7 0.50/4 1.00/4 1.00/1 62522467 T C True 2 0.111 0.318 0.0 False False 0.11/9 0.00/1 0.33/3 0.25/8 0.40/10 0.00/2 0.00/7 0.00/2 0.00/4 62522471 T A True 5 0.444 0.524 0.667 False False 0.44/9 0.00/1 1.00/3 0.25/8 0.67/9 1.00/2 0.43/7 1.00/2 0.75/4 62522475 G T True 1 0.2 0.111 1.0 False False 0.20/5 0.00/1 0.00/5 0.33/3 1.00/4 1.00/1 62522482 G A True 2 0.25 0.0 1.0 False True 0.25/4 0.00/1 0.00/4 0.00/1 1.00/4 1.00/1 62522499 A G True 2 0.167 0.095 0.438 False False 0.17/6 0.00/3 0.00/2 0.12/8 0.12/8 0.00/1 0.62/8 0.25/4 0.33/3 62522503 C T True 1 0.917 1.0 False True 1.00/2 1.00/2 1.00/2 0.67/3 1.00/5 1.00/1 1.00/3 1.00/3 1.00/2 62522508 A C True 5 0.333 0.5 0.571 False False 0.33/6 0.67/3 1.00/2 0.25/8 0.57/7 1.00/1 0.33/6 0.75/4 0.67/3 62522513 A G True 5 0.6 0.526 0.929 False False 0.60/5 0.67/3 1.00/2 0.25/8 0.67/6 0.00/1 1.00/6 1.00/4 1.00/3 62522538 T C True 4 0.4 0.524 0.583 False False 0.40/5 0.67/3 1.00/2 0.25/8 0.62/8 0.67/3 0.40/5 0.67/3 1.00/1 62522539 C A True 2 0.923 0.857 False False 1.00/2 1.00/2 1.00/2 0.75/4 1.00/5 0.67/3 1.00/2 1.00/2 62522540 T A True 5 0.4 0.5 0.545 False False 0.40/5 0.50/4 1.00/2 0.25/8 0.62/8 0.67/3 0.50/4 0.67/3 0.00/1 62522599 T A True 1 0.0 0.0 0.308 False False 0.00/6 0.00/5 0.00/3 0.00/9 0.00/6 0.67/3 0.00/4 0.40/5 0.00/1 62522607 A G True 1 0.0 0.13 0.308 False False 0.00/4 0.20/5 0.33/3 0.11/9 0.00/6 0.00/3 0.75/4 0.20/5 0.00/1 62522614 C G True 1 0.056 0.0 False False 0.00/2 0.25/4 0.00/2 0.00/7 0.00/5 0.00/3 0.00/1 0.00/4 0.00/1 62522615 A G True 6 0.25 0.48 1.0 True False 0.25/4 0.33/6 0.67/3 0.40/10 0.67/6 1.00/3 1.00/4 1.00/5 1.00/1 62522616 T C True 6 0.25 0.56 1.0 False False 0.25/4 0.50/6 1.00/3 0.40/10 0.67/6 1.00/3 1.00/5 1.00/5 1.00/1 62522619 C A True 1 0.056 0.0 False False 0.00/2 0.25/4 0.00/2 0.00/7 0.00/5 0.00/3 0.00/1 0.00/4 0.00/1 62522620 C G True 1 0.056 0.0 False False 0.00/2 0.25/4 0.00/2 0.00/7 0.00/5 0.00/3 0.00/1 0.00/4 0.00/1 62522624 G A True 1 0.571 1.0 False True 0.00/2 0.50/2 1.00/1 0.67/3 0.00/1 1.00/4 1.00/1 62522625 C G True 1 0.053 0.0 False False 0.00/3 0.25/4 0.00/3 0.00/7 0.00/5 0.00/3 0.00/1 0.00/4 0.00/1 62522628 A G True 2 0.0 0.154 0.333 False False 0.00/6 0.17/6 0.25/4 0.20/10 0.00/6 0.00/3 0.67/6 0.20/5 0.00/1 62522632 A G True 7 0.5 0.6 1.0 False False 0.50/6 0.60/5 1.00/4 0.40/10 0.67/6 1.00/3 1.00/5 1.00/6 1.00/1 62522646 A C True 7 0.429 0.565 1.0 False False 0.43/7 0.40/5 1.00/4 0.38/8 0.67/6 1.00/3 1.00/4 1.00/5 1.00/1 62522665 C T True 4 0.6 0.471 1.0 True True 0.60/5 0.33/3 1.00/2 0.29/7 0.60/5 1.00/2 1.00/1 1.00/4 1.00/1 62522669 T A True 6 0.444 0.545 1.0 False False 0.44/9 0.43/7 1.00/3 0.43/7 0.60/5 1.00/1 1.00/4 1.00/5 1.00/1 62522674 T C True 5 0.333 0.32 0.636 False False 0.33/9 0.12/8 0.67/3 0.25/8 0.50/6 1.00/1 0.25/4 0.80/5 1.00/1 62522688 C T True 4 0.4 0.412 1.0 False True 0.40/5 0.25/4 1.00/2 0.29/7 0.50/4 1.00/2 1.00/1 1.00/3 1.00/1 62522691 G A True 3 0.5 0.625 1.0 False True 0.50/4 0.50/4 0.50/2 1.00/1 1.00/1 1.00/1 1.00/4 1.00/1 1.00/1 62522703 A G True 5 0.286 0.231 0.467 False False 0.29/7 0.29/7 0.25/4 0.22/9 0.17/6 0.25/4 0.67/6 0.33/3 0.50/2 62522709 A G True 1 0.0 0.0 0.053 False False 0.00/7 0.00/6 0.00/4 0.00/9 0.00/6 0.00/6 0.00/6 0.00/3 0.25/4 62522710 T G True 1 0.0 0.0 0.053 False False 0.00/8 0.00/6 0.00/4 0.00/9 0.00/6 0.00/6 0.00/6 0.00/3 0.25/4 62522723 T A True 1 0.0 0.0 0.045 False False 0.00/9 0.00/7 0.00/6 0.00/10 0.00/6 0.00/8 0.00/5 0.25/4 0.00/5 62522733 C A True 1 0.0 0.0 0.059 False False 0.00/6 0.00/2 0.00/3 0.00/7 0.00/4 0.00/7 0.00/3 0.00/3 0.25/4 62522735 T C True 8 0.333 0.267 0.64 False False 0.33/9 0.00/7 0.43/7 0.30/10 0.33/6 0.88/8 0.50/6 0.60/5 0.50/6 62522739 A C True 8 0.455 0.281 0.68 False False 0.45/11 0.00/7 0.43/7 0.27/11 0.43/7 0.88/8 0.50/6 0.60/5 0.67/6 62522742 A T True 9 0.727 0.606 1.0 False False 0.73/11 0.50/8 0.71/7 0.55/11 0.71/7 1.00/8 1.00/6 1.00/5 1.00/6 62522757 C T True 6 0.625 0.5 1.0 True True 0.62/8 0.50/2 1.00/2 0.29/7 0.60/5 1.00/8 1.00/3 1.00/4 1.00/6 62522789 T A True 9 0.727 0.657 0.966 False False 0.73/11 0.60/5 0.80/10 0.50/12 0.75/8 1.00/12 0.75/4 1.00/4 1.00/9 62522795 A T True 9 0.727 0.649 0.9 False False 0.73/11 0.60/5 0.67/12 0.54/13 0.86/7 1.00/11 0.80/5 1.00/4 0.80/10 62522796 A T True 9 0.75 0.649 0.9 False False 0.75/12 0.60/5 0.67/12 0.54/13 0.86/7 1.00/11 0.80/5 1.00/4 0.80/10 62522797 T C True 7 0.417 0.324 0.667 False False 0.42/12 0.20/5 0.42/12 0.15/13 0.57/7 0.82/11 0.40/5 0.75/4 0.60/10 62522806 C T True 5 0.25 0.381 0.783 False True 0.25/8 0.50/2 0.83/6 0.00/8 0.40/5 0.67/9 0.67/3 0.67/3 1.00/8 62522848 A G True 8 0.333 0.389 0.312 False False 0.33/15 0.60/5 0.29/14 0.45/11 0.33/6 0.10/10 0.50/6 0.60/5 0.27/11 62522863 T A True 9 0.8 0.784 0.969 False False 0.80/15 0.80/5 0.77/13 0.69/13 1.00/6 1.00/9 0.83/6 1.00/6 1.00/11 62522865 G A True 2 0.0 0.333 0.818 False True 0.00/5 0.75/4 0.20/5 0.00/6 0.67/3 1.00/1 1.00/3 0.50/4 1.00/3 62522884 G T True 6 1.0 0.778 1.0 False False 1.00/5 0.75/4 0.40/5 1.00/6 1.00/3 1.00/1 1.00/4 1.00/5 1.00/2 62522887 T C True 8 0.769 0.675 0.909 False False 0.77/13 0.14/7 0.69/13 0.77/13 1.00/7 1.00/8 0.71/7 0.88/8 1.00/10 62522890 A G True 6 0.385 0.333 0.364 False False 0.38/13 0.43/7 0.15/13 0.42/12 0.43/7 0.11/9 0.57/7 0.71/7 0.20/10 62522899 T A True 9 0.846 0.75 0.964 False False 0.85/13 0.62/8 0.69/13 0.75/12 1.00/7 1.00/6 0.86/7 1.00/6 1.00/9 62522959 C T True 4 0.625 0.583 0.9 False True 0.62/8 0.29/7 0.86/7 0.50/8 1.00/2 1.00/3 0.50/2 1.00/3 1.00/2 62522985 C T True 5 0.667 0.577 0.917 False True 0.67/6 0.33/9 0.86/7 0.50/8 1.00/2 1.00/3 0.50/2 1.00/5 1.00/2 62522997 T C True 6 0.222 0.382 0.556 False False 0.22/9 0.33/9 0.55/11 0.00/8 0.67/6 0.40/5 0.75/4 0.50/8 1.00/1