Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 85
  seen in >= 2 oysters: 61
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 3]
    62522360 G>A  Pum=0.333  Qui=0.5  Rio=1.0
    62522378 G>T  Pum=0.167  Qui=0.438  Rio=1.0
    62522615 A>G  Pum=0.25  Qui=0.48  Rio=1.0
    62522665 C>T  Pum=0.6  Qui=0.471  Rio=1.0
    62522757 C>T  Pum=0.625  Qui=0.5  Rio=1.0

25 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    31.4    121        2    9.2
Qui1     Qui    42.6    115        2    8.4
Qui2     Qui    59.7     72        0    7.1
Qui3     Qui    41.9    124        3    9.8
Qui4     Qui    37.6     85        2    7.5
Rio1     Rio    66.0     47        1    5.5
Rio2     Rio    68.5    124        1    6.4
Rio3     Rio    78.7     61        2    4.8
Rio4     Rio    66.7     78        1    6.5