Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 68
  seen in >= 2 oysters: 33
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 1]
    62520214 A>T  Pum=0.0  Qui=0.238  Rio=0.778
    62520263 T>A  Pum=  Qui=0.414  Rio=1.0
    62520931 C>T  Pum=0.5  Qui=0.438  Rio=1.0
    62520941 C>A  Pum=0.5  Qui=0.5  Rio=1.0

18 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    64.3     28        1    4.8
Qui1     Qui    60.0     40        1    8.6
Qui2     Qui    23.4     47        0    6.1
Qui3     Qui    27.3     66        2   11.8
Qui4     Qui    50.0     52        1    7.4
Rio1     Rio    69.6     23        1    5.4
Rio2     Rio    66.7     27        0    4.1
Rio3     Rio    70.4     27        0    4.1
Rio4     Rio    61.3     31        1    6.9