Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    62519103 C>A  Pum=0.5  Qui=0.364  Rio=1.0
    62519136 C>T  Pum=0.25  Qui=0.048  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.0     10        0   19.0
Qui1     Qui    50.0      2        0   10.0
Qui2     Qui    62.5      8        0   12.0
Qui3     Qui    53.8     13        0   20.5
Qui4     Qui    80.0      5        0    6.0
Rio1     Rio   100.0      6        0    8.0
Rio2     Rio   100.0      5        0    6.0
Rio3     Rio   100.0      3        0    8.0
Rio4     Rio   100.0      7        0   12.0