Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    62519103 C>A  Pum=0.5  Qui=0.364  Rio=1.0
    62519136 C>T  Pum=0.25  Qui=0.048  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    11.1      9        1   17.5
Qui1     Qui    33.3      3        0   10.5
Qui2     Qui    55.6      9        0   12.5
Qui3     Qui    50.0     12        0   21.0
Qui4     Qui    33.3      6        0    7.0
Rio1     Rio     0.0      6        0    8.0
Rio2     Rio     0.0      5        0    6.0
Rio3     Rio     0.0      3        1    7.0
Rio4     Rio     0.0      7        1   12.0