pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 62513001 A C True 6 0.143 0.325 0.575 False False 0.14/14 0.36/22 0.39/18 0.00/23 0.71/14 0.17/12 0.92/13 0.38/8 0.86/7 62513038 G A True 4 0.333 0.231 0.778 True True 0.33/6 0.33/6 0.50/2 0.00/5 0.50/4 1.00/1 1.00/4 62513073 A C True 6 0.381 0.263 0.185 False False 0.38/21 0.14/21 0.25/16 0.35/26 0.29/17 0.41/17 0.00/12 0.38/8 0.00/17 62513084 T A True 9 0.474 0.518 0.857 False False 0.47/19 0.39/23 0.56/16 0.38/26 0.83/18 0.82/17 0.91/11 1.00/9 0.79/19 62513098 G A True 2 0.3 0.857 False True 0.33/3 0.36/11 0.00/4 0.40/5 0.67/3 1.00/1 1.00/3 62513129 A G True 2 0.231 0.152 0.208 False False 0.23/13 0.32/22 0.00/20 0.07/28 0.23/22 0.24/17 0.38/8 0.00/7 0.19/21 62513159 C T True 9 0.583 0.658 1.0 False True 0.58/12 0.80/15 0.67/21 0.46/28 0.87/15 1.00/14 1.00/9 1.00/8 1.00/20 62513161 C T True 9 0.583 0.646 1.0 False True 0.58/12 0.79/14 0.64/22 0.46/28 0.87/15 1.00/14 1.00/10 1.00/7 1.00/20 62513253 T C True 9 0.733 0.613 1.0 False False 0.73/15 0.88/16 0.83/12 0.33/21 0.54/13 1.00/16 1.00/12 1.00/9 1.00/15 62513421 G C True 1 0.056 False False 0.00/1 0.00/5 0.00/4 0.25/4 0.00/5 0.00/2 0.00/1 62513425 G C True 2 0.412 1.0 False False 1.00/1 0.00/5 0.75/4 0.00/3 0.80/5 1.00/2 1.00/1 1.00/1 62513429 C A True 1 0.25 0.0 0.0 False False 0.25/4 0.00/3 0.00/6 0.00/1 0.00/5 0.00/2 0.00/6 62513432 A G True 1 0.0 0.04 0.0 False False 0.00/6 0.00/8 0.25/4 0.00/8 0.00/5 0.00/7 0.00/2 0.00/1 0.00/5 62513442 T C True 3 0.0 0.19 0.667 False False 0.00/5 0.00/5 0.00/5 0.43/7 0.25/4 0.67/6 1.00/2 0.00/1 0.67/3 62513448 G C True 1 0.062 0.0 False False 0.00/2 0.00/4 0.00/5 0.00/3 0.25/4 0.00/2 0.00/1 0.00/1 62513454 G T True 1 0.077 0.0 False False 0.00/2 0.25/4 0.00/4 0.00/3 0.00/2 0.00/2 0.00/1 0.00/1 62513483 G A True 1 0.2 False True 0.50/2 0.00/5 0.50/4 0.00/3 0.33/3 1.00/2 1.00/1 62513493 A C True 1 0.059 0.0 False False 0.00/3 0.00/6 0.00/3 0.00/4 0.25/4 0.00/2 0.00/1 0.00/1 62513495 T C True 1 0.059 False False 0.00/3 0.00/6 0.00/3 0.00/4 0.25/4 0.00/1 0.00/1 62513496 A T True 1 0.062 False False 0.00/3 0.00/6 0.00/3 0.25/4 0.00/3 1.00/1 0.00/1 62513497 A C True 0 0.0 0.25 False False 0.00/3 0.00/6 0.00/3 0.00/5 0.00/4 0.00/2 1.00/1 0.00/1 62513498 G T True 1 0.077 False False 0.00/1 0.00/5 0.00/3 0.25/4 0.00/1 0.00/1 1.00/1 62513499 T C True 0 0.0 0.25 False False 0.00/3 0.00/6 0.00/3 0.00/5 0.00/4 0.00/2 1.00/1 0.00/1 62513502 G A True 1 0.071 False True 0.00/1 0.00/5 0.00/3 0.25/4 0.00/2 0.00/1 0.00/1 62513505 A T True 0 0.056 0.25 False False 0.00/3 0.00/6 0.00/3 0.20/5 0.00/4 0.00/2 1.00/1 0.00/1 62513506 T C True 0 0.0 0.25 False False 0.00/3 0.00/6 0.00/3 0.00/5 0.00/4 0.00/2 1.00/1 0.00/1 62513507 A T True 0 0.056 0.25 False False 0.00/3 0.00/6 0.00/3 0.20/5 0.00/4 0.00/2 1.00/1 0.00/1 62513512 C T True 0 0.4 False True 0.00/2 0.00/1 1.00/1 0.33/3 1.00/1 0.00/1 62513522 A T True 1 0.056 False False 0.00/3 0.00/7 0.00/3 0.25/4 0.00/4 0.00/1 62513529 T C True 1 0.25 0.0 False False 0.25/4 0.00/7 0.00/2 0.00/3 0.00/4 0.00/1 0.00/1 62513582 T C True 2 0.25 0.227 0.571 False False 0.25/4 0.10/10 0.50/2 0.20/5 0.40/5 1.00/2 0.00/1 1.00/1 0.33/3 62513612 T C True 3 0.333 0.185 0.444 False False 0.33/6 0.10/10 0.33/3 0.12/8 0.33/6 0.67/3 0.00/1 0.00/1 0.50/4 62513621 A G True 1 0.0 0.0 0.222 False False 0.00/6 0.00/8 0.00/3 0.00/10 0.00/6 0.00/3 1.00/1 0.00/1 0.25/4 62513635 A T True 1 0.0 0.107 0.222 False False 0.00/8 0.00/8 0.00/3 0.11/9 0.25/8 0.67/3 0.00/1 0.00/1 0.00/4 62513637 A G True 1 0.125 0.0 0.111 False False 0.12/8 0.00/9 0.00/3 0.00/9 0.00/8 0.00/3 0.00/1 0.00/1 0.25/4 62513638 A G True 1 0.125 0.0 0.111 False False 0.12/8 0.00/8 0.00/4 0.00/9 0.00/8 0.00/3 0.00/1 0.00/1 0.25/4 62513643 A T True 1 0.0 0.0 0.111 False False 0.00/8 0.00/9 0.00/4 0.00/9 0.00/8 0.00/3 0.00/1 0.00/1 0.25/4 62513660 C A True 1 0.25 0.0 False False 0.25/4 0.00/3 0.00/3 0.00/2 0.00/4 0.00/1 0.00/1 62513713 C T True 1 0.0 0.077 False True 0.00/5 0.00/4 0.25/4 0.00/2 0.00/3 1.00/1 62513715 G A True 0 0.053 0.4 False True 0.00/2 0.20/5 0.00/3 0.00/8 0.00/3 0.00/1 1.00/1 0.00/1 0.50/2 62513733 T A True 0 0.0 0.0 0.25 False False 0.00/7 0.00/10 0.00/9 0.00/11 0.00/6 0.00/1 1.00/1 0.00/2 62513747 A G True 0 0.0 0.0 0.25 False False 0.00/9 0.00/10 0.00/9 0.00/11 0.00/5 0.00/1 0.00/1 0.50/2 62513749 T A True 0 0.0 0.0 0.5 False False 0.00/8 0.00/9 0.00/9 0.00/11 0.00/5 0.00/1 1.00/1 0.50/2 62513753 T G True 0 0.111 0.03 0.333 False False 0.11/9 0.11/9 0.00/10 0.00/9 0.00/5 0.00/2 1.00/1 0.00/1 0.50/2 62513763 G A True 1 0.25 0.0 0.25 False True 0.25/4 0.00/4 0.00/4 0.00/6 0.00/2 0.50/2 0.00/1 0.00/1 62513790 G A True 1 0.25 0.05 1.0 False True 0.25/4 0.20/5 0.00/4 0.00/8 0.00/3 1.00/2 1.00/1 1.00/1 62513856 A T True 1 0.091 0.0 0.2 False False 0.09/11 0.00/7 0.00/12 0.00/17 0.00/5 0.25/4 0.00/1 62513869 A G True 1 0.0 0.026 0.0 False False 0.00/11 0.00/7 0.00/12 0.00/15 0.25/4 0.00/4 0.00/1 62513870 T C True 1 0.091 0.026 0.4 False False 0.09/11 0.00/8 0.00/12 0.07/15 0.00/4 0.50/4 0.00/1 62513933 A C True 0 0.0 0.0 0.25 False False 0.00/11 0.00/7 0.00/14 0.00/17 0.00/5 0.00/2 1.00/1 0.00/1 62513942 G T True 1 0.0 0.053 False False 0.00/4 0.25/4 0.00/4 0.00/8 0.00/3 0.00/2 0.00/1 62513944 A T True 0 0.0 0.0 0.25 False False 0.00/9 0.00/7 0.00/12 0.00/19 0.00/5 0.00/2 1.00/1 0.00/1 62513953 G A True 1 0.0 0.059 False True 0.00/4 0.25/4 0.00/3 0.00/8 0.00/2 0.50/2 0.00/1