Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 53
  seen in >= 2 oysters: 13
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    62513038 G>A  Pum=0.333  Qui=0.231  Rio=0.778

36 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    17.3    127        0    9.8
Qui1     Qui    20.8    216        0   11.6
Qui2     Qui    31.5     89        1   10.0
Qui3     Qui    14.6    206        0   15.5
Qui4     Qui    43.4    136        0    9.7
Rio1     Rio    63.8     94        0    7.3
Rio2     Rio    10.0     20        0    4.4
Rio3     Rio    91.3     23        0    3.3
Rio4     Rio    40.6     69        0    7.4