pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 62510021 G A True 3 0.533 1.0 False True 0.50/2 0.67/3 0.75/4 0.43/7 0.00/1 1.00/1 1.00/4 1.00/2 62510029 A T True 1 0.25 0.061 0.032 False False 0.25/8 0.00/6 0.17/12 0.00/10 0.00/5 0.14/7 0.00/6 0.00/11 0.00/7 62510044 C G True 1 0.059 0.0 False False 0.00/3 0.00/3 0.00/6 0.25/4 0.00/4 0.00/3 0.00/2 0.00/6 0.00/2 62510059 T C True 6 0.5 0.452 0.263 False False 0.50/6 0.25/4 0.50/10 0.45/11 0.50/6 0.33/3 0.00/2 0.57/7 0.00/7 62510089 G A True 4 0.25 0.235 0.5 False True 0.25/4 0.33/3 0.50/6 0.00/6 0.00/2 0.00/3 1.00/2 0.25/4 0.80/5 62510101 T C True 9 0.833 0.611 0.903 False False 0.83/6 0.83/6 0.90/10 0.38/13 0.43/7 1.00/8 0.75/4 0.88/8 0.91/11 62510106 G T True 3 0.5 0.429 0.0 False False 0.50/4 0.67/3 0.33/6 0.44/9 0.33/3 0.00/4 0.00/3 0.00/4 0.00/5 62510142 G A True 1 0.0 0.0 0.053 False True 0.00/5 0.00/4 0.00/8 0.00/8 0.00/3 0.00/5 0.25/4 0.00/6 0.00/4 62510191 C A True 4 0.25 0.4 0.231 False False 0.25/4 0.33/3 0.67/3 0.25/4 0.40/5 0.33/3 0.25/4 0.50/2 0.00/4 62510194 C T True 1 0.0 0.0 0.077 False True 0.00/4 0.00/3 0.00/3 0.00/4 0.00/5 0.00/3 0.25/4 0.00/2 0.00/4 62510197 C A True 1 0.0 0.0 0.077 False False 0.00/4 0.00/3 0.00/3 0.00/4 0.00/5 0.00/3 0.25/4 0.00/2 0.00/4 62510206 G C True 1 0.0 0.037 0.0 False False 0.00/7 0.00/4 0.00/8 0.00/11 0.25/4 0.00/5 0.00/3 0.00/6 0.00/4 62510210 C T True 3 0.8 0.083 0.643 True True 0.80/5 0.00/2 0.00/2 0.00/4 0.25/4 0.67/3 0.60/5 0.33/3 1.00/3 62510274 A G True 9 0.889 0.645 0.812 False False 0.89/9 0.80/5 0.60/5 0.62/13 0.62/8 1.00/8 0.57/7 0.90/10 0.71/7 62510294 T C True 3 0.25 0.0 0.3 False False 0.25/8 0.00/6 0.00/5 0.00/11 0.00/8 0.12/8 0.40/5 0.14/7 0.50/10 62510295 T C True 7 0.5 0.2 0.6 False False 0.50/8 0.50/6 0.40/5 0.00/11 0.12/8 0.38/8 0.60/5 0.29/7 1.00/10 62510298 T C True 1 0.0 0.0 0.036 False False 0.00/8 0.00/6 0.00/5 0.00/11 0.00/8 0.00/8 0.25/4 0.00/7 0.00/9 62510306 A G True 8 0.5 0.571 0.615 False False 0.50/8 0.83/6 0.60/5 0.67/9 0.25/8 0.71/7 0.33/3 0.71/7 0.56/9 62510332 A G True 2 0.2 0.174 0.292 False False 0.20/5 0.40/5 0.33/3 0.00/8 0.14/7 0.20/5 0.00/2 0.12/8 0.56/9 62510341 A G True 7 0.5 0.565 0.619 False False 0.50/4 0.80/5 0.33/3 0.75/8 0.29/7 0.80/5 0.00/2 0.86/7 0.43/7 62510361 A T True 5 0.4 0.125 0.632 True False 0.40/5 0.40/5 0.33/3 0.00/9 0.00/7 0.25/4 0.33/6 1.00/9 62510371 G T True 3 0.476 0.538 False False 0.50/2 0.33/3 0.00/2 0.78/9 0.29/7 1.00/3 0.80/5 0.00/5 62510382 G T True 3 0.55 0.545 False False 0.50/2 0.25/4 0.00/1 0.78/9 0.50/6 1.00/3 1.00/3 0.00/5 62510398 T C True 1 0.0 0.0 0.062 False False 0.00/5 0.00/4 0.00/4 0.00/12 0.00/9 0.25/4 0.00/4 0.00/8 62510402 A T True 2 0.0 0.069 0.059 False False 0.00/5 0.50/4 0.00/4 0.00/12 0.00/9 0.25/4 0.00/1 0.00/4 0.00/8 62510403 A T True 2 0.0 0.0 0.176 False False 0.00/5 0.00/4 0.00/4 0.00/13 0.00/8 0.00/4 0.00/1 0.25/4 0.25/8 62510404 A T True 1 0.0 0.069 0.0 False False 0.00/5 0.50/4 0.00/4 0.00/13 0.00/8 0.00/3 0.00/1 0.00/3 0.00/8 62510406 C A True 0 0.0 0.25 False False 0.00/2 0.00/1 0.00/1 0.00/2 0.00/1 0.33/3 62510407 T A True 1 0.0 0.0 0.154 False False 0.00/5 0.00/3 0.00/4 0.00/14 0.00/7 0.25/4 0.33/3 0.00/6 62510436 C A True 0 0.25 False False 0.00/2 0.50/2 0.00/2 0.00/1 0.00/2 62510445 A T True 4 0.4 0.156 0.571 False False 0.40/5 0.50/4 0.20/5 0.00/14 0.22/9 0.25/4 0.00/1 0.00/2 1.00/7 62510446 G T True 2 0.464 0.333 False False 0.33/3 0.00/5 0.67/3 0.69/13 0.29/7 0.67/3 1.00/1 0.00/5 62510483 G T True 1 0.034 0.0 False False 0.00/1 0.00/6 0.25/4 0.00/12 0.00/7 0.00/5 0.00/1 0.00/3 62510485 C T True 0 0.5 False True 0.00/2 0.67/3 0.00/1 0.50/2 1.00/1 0.00/1 1.00/1 62510491 A G True 4 0.0 0.361 0.333 False False 0.00/5 0.00/5 0.25/8 0.60/15 0.25/8 0.67/6 0.00/2 0.00/1 0.00/3 62510497 G A True 1 0.143 0.556 False True 1.00/2 0.17/6 0.40/5 0.00/11 0.17/6 0.20/5 1.00/1 1.00/3 62510523 T A True 4 0.6 0.139 0.556 False False 0.60/5 0.14/7 0.43/7 0.00/14 0.12/8 0.12/8 1.00/4 0.00/1 1.00/5 62510547 A T True 4 0.2 0.474 0.421 False False 0.20/5 0.14/7 0.43/7 0.73/15 0.33/9 0.88/8 0.00/4 1.00/1 0.00/6 62510548 A G True 4 0.5 0.132 0.474 False False 0.50/4 0.14/7 0.43/7 0.00/15 0.11/9 0.12/8 0.75/4 0.00/1 0.83/6 62510551 C A True 1 0.111 0.0 False False 0.00/1 0.00/2 0.00/3 0.25/4 0.00/1 0.00/1 0.00/1 0.00/1 62510577 G T True 3 0.129 0.647 True False 1.00/2 0.09/11 0.40/5 0.00/12 0.33/3 0.14/7 1.00/4 1.00/6 62510714 A G True 8 0.667 0.514 0.696 False False 0.67/6 0.33/9 0.90/10 0.44/9 0.29/7 0.88/8 0.50/6 1.00/3 0.50/6 62510734 C T True 0 0.6 1.0 False True 1.00/1 1.00/2 0.50/2 0.00/1 1.00/1 1.00/3 1.00/3 62510796 G A True 4 0.2 0.184 0.8 True True 0.20/5 0.12/8 0.36/11 0.00/13 0.33/6 0.50/4 1.00/3 0.50/2 1.00/6 62510827 A T True 6 0.5 0.575 0.833 False False 0.50/4 0.56/9 0.83/6 0.59/17 0.38/8 1.00/4 0.00/1 1.00/1 62510879 C G True 1 0.067 0.0 False False 0.00/2 0.00/5 0.00/2 0.25/4 0.00/4 0.00/3 0.00/1 0.00/1 0.00/2 62510880 C A True 1 0.067 0.0 False False 0.00/2 0.00/5 0.00/2 0.25/4 0.00/4 0.00/3 0.00/1 0.00/1 0.00/2 62510883 C G True 1 0.067 0.0 False False 0.00/2 0.00/5 0.00/2 0.25/4 0.00/4 0.00/3 0.00/1 0.00/1 0.00/2 62510918 C A True 1 0.067 0.0 False False 0.00/2 0.00/4 0.00/4 0.00/3 0.25/4 0.00/3 0.00/2 0.00/2 0.00/1 62510919 C G True 1 0.067 0.0 False False 0.00/2 0.00/4 0.00/4 0.00/3 0.25/4 0.00/3 0.00/2 0.00/2 0.00/1 62510920 C A True 1 0.067 0.0 False False 0.00/2 0.00/4 0.00/4 0.00/3 0.25/4 0.00/3 0.00/2 0.00/2 0.00/1 62510928 A T True 3 0.273 0.302 0.091 False False 0.27/11 0.45/11 0.18/11 0.46/13 0.00/8 0.10/10 0.00/3 0.33/3 0.00/6 62510937 T C True 1 0.091 0.22 0.074 False False 0.09/11 0.10/10 0.22/9 0.31/13 0.22/9 0.17/12 0.00/3 0.00/3 0.00/9 62510940 T C True 2 0.1 0.22 0.074 False False 0.10/10 0.10/10 0.22/9 0.29/14 0.25/8 0.17/12 0.00/3 0.00/3 0.00/9 62510954 T A True 6 0.2 0.28 0.781 True False 0.20/10 0.29/14 0.80/10 0.00/18 0.25/8 0.57/14 1.00/4 0.67/3 1.00/11 62510997 G A True 7 0.636 0.629 1.0 False True 0.64/11 0.78/9 1.00/8 0.54/13 0.00/5 1.00/10 1.00/3 1.00/5 1.00/12 62510999 G A True 7 0.636 0.629 1.0 False True 0.64/11 0.78/9 1.00/8 0.54/13 0.00/5 1.00/10 1.00/3 1.00/5 1.00/12