Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 57
  seen in >= 2 oysters: 33
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    62510210 C>T  Pum=0.8  Qui=0.083  Rio=0.643
    62510361 A>T  Pum=0.4  Qui=0.125  Rio=0.632
    62510577 G>T  Pum=  Qui=0.129  Rio=0.647
    62510796 G>A  Pum=0.2  Qui=0.184  Rio=0.8
    62510954 T>A  Pum=0.2  Qui=0.28  Rio=0.781

20 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    67.5     83        1    7.0
Qui1     Qui    42.0    131        0    8.3
Qui2     Qui    58.6    133        0    8.1
Qui3     Qui    51.9    187        0   13.0
Qui4     Qui    33.3     93        1    7.8
Rio1     Rio    85.8    106        1    7.5
Rio2     Rio    77.2     57        2    4.5
Rio3     Rio    89.1     64        1    4.7
Rio4     Rio    82.4     74        2    7.6