pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 62509003 G A True 0 0.375 0.5 False True 0.00/1 0.50/2 1.00/1 0.00/3 0.50/2 0.00/1 1.00/1 1.00/1 0.00/1 62509005 G A True 0 0.125 0.25 False True 0.00/1 0.00/2 1.00/1 0.00/3 0.00/2 0.00/1 0.00/1 1.00/1 0.00/1 62509008 T C True 1 0.04 0.273 False False 0.00/1 0.20/5 0.00/6 0.00/6 0.00/8 0.25/4 0.00/3 0.00/1 0.67/3 62509032 G T True 0 0.125 0.25 False False 0.00/1 0.00/2 0.50/2 0.00/3 0.00/1 0.00/1 0.00/1 1.00/1 0.00/1 62509052 A G True 1 0.0 0.111 False False 0.00/2 0.00/4 0.00/6 0.00/5 0.00/8 0.00/3 0.25/4 0.00/2 62509092 T A True 1 0.0 0.111 False False 0.00/2 0.00/2 0.00/9 0.00/8 0.00/8 0.25/4 0.00/2 0.00/1 0.00/2 62509094 C G True 1 0.0 0.125 False False 0.00/1 0.00/1 0.00/8 0.00/6 0.00/8 0.25/4 0.00/2 0.00/1 0.00/1 62509106 T C True 4 0.536 0.818 False False 0.50/2 0.67/3 0.56/9 0.38/8 0.62/8 0.80/5 1.00/2 1.00/2 0.50/2 62509107 A C True 4 0.536 0.818 False False 0.50/2 0.67/3 0.56/9 0.38/8 0.62/8 0.80/5 1.00/2 1.00/2 0.50/2 62509211 C T True 4 0.731 1.0 False True 1.00/2 1.00/2 0.75/8 0.71/7 0.67/9 1.00/2 1.00/2 1.00/1 1.00/5 62509231 A G True 4 0.25 0.211 0.067 False False 0.25/4 0.40/5 0.00/10 0.33/12 0.18/11 0.00/1 0.00/5 0.25/4 0.00/5 62509265 C G True 1 0.25 0.0 0.0 False False 0.25/4 0.00/1 0.00/7 0.00/8 0.00/4 0.00/1 0.00/3 0.00/1 0.00/4 62509297 G A True 3 0.227 0.818 True True 1.00/1 0.20/5 0.40/5 0.00/7 0.40/5 0.00/2 1.00/7 1.00/1 1.00/1 62509306 T C True 2 0.2 0.122 0.318 False False 0.20/5 0.17/6 0.18/11 0.00/15 0.22/9 0.25/4 0.22/9 0.00/3 0.67/6 62509351 C T True 2 0.316 1.0 False True 1.00/3 0.00/1 0.75/4 0.11/9 0.40/5 1.00/1 1.00/2 1.00/2 1.00/2 62509361 A G True 9 0.714 0.491 1.0 True False 0.71/7 0.33/6 0.64/11 0.30/20 0.69/16 1.00/4 1.00/10 1.00/8 1.00/5 62509378 G T True 8 0.6 0.667 1.0 False False 0.60/5 0.75/4 0.62/8 0.62/13 0.73/11 1.00/3 1.00/7 1.00/4 1.00/5 62509397 T C True 1 0.0 0.0 0.034 False False 0.00/7 0.00/8 0.00/14 0.00/22 0.00/16 0.25/4 0.00/9 0.00/9 0.00/7 62509419 G A True 9 0.667 0.651 1.0 False True 0.67/6 0.80/5 0.75/12 0.50/16 0.70/10 1.00/4 1.00/7 1.00/6 1.00/5 62509441 C T True 3 0.421 1.0 False True 1.00/2 0.40/5 1.00/1 0.25/8 0.60/5 1.00/1 1.00/1 1.00/3 1.00/2 62509443 G A True 7 0.667 0.659 0.913 False True 0.67/6 1.00/3 0.79/14 0.53/17 0.60/10 0.67/3 0.88/8 1.00/7 1.00/5 62509454 G A True 9 0.75 0.711 0.96 False True 0.75/8 1.00/5 0.77/13 0.56/16 0.73/11 1.00/4 0.89/9 1.00/7 1.00/5 62509478 C A True 1 0.053 0.0 False False 0.00/3 0.00/5 0.00/1 0.00/9 0.25/4 0.00/2 0.00/3 0.00/3 62509479 G A True 9 0.8 0.707 0.958 False True 0.80/5 0.83/6 0.75/12 0.53/15 0.88/8 1.00/4 1.00/9 0.83/6 1.00/5 62509483 A T True 1 0.0 0.121 0.0 False False 0.00/9 0.00/11 0.00/12 0.30/23 0.00/12 0.00/3 0.00/11 0.00/9 0.00/8 62509484 C A True 3 0.529 1.0 False False 0.67/3 0.50/4 1.00/1 0.38/8 0.75/4 1.00/2 1.00/3 1.00/3 62509508 T C True 1 0.2 0.151 0.16 False False 0.20/10 0.20/10 0.09/11 0.09/23 0.33/9 0.00/2 0.12/8 0.17/6 0.22/9 62509530 T C True 3 0.167 0.149 0.185 False False 0.17/12 0.10/10 0.22/9 0.10/20 0.25/8 0.25/4 0.12/8 0.40/5 0.10/10 62509533 C A True 3 0.25 0.417 1.0 False False 0.25/4 0.25/4 1.00/1 0.40/5 0.50/2 1.00/1 1.00/1 1.00/1 1.00/1 62509564 T C True 3 0.25 0.159 0.125 False False 0.25/8 0.18/11 0.25/8 0.07/15 0.20/10 0.25/4 0.14/7 0.00/3 0.10/10 62509565 G A True 6 0.719 1.0 False True 1.00/3 0.83/6 0.83/6 0.46/13 1.00/7 1.00/3 1.00/6 1.00/3 1.00/9 62509591 A T True 1 0.0 0.0 0.048 False False 0.00/8 0.00/9 0.00/8 0.00/11 0.00/8 0.25/4 0.00/5 0.00/3 0.00/9 62509592 A T True 1 0.0 0.0 0.048 False False 0.00/8 0.00/8 0.00/7 0.00/11 0.00/8 0.25/4 0.00/5 0.00/3 0.00/9 62509595 T C True 1 0.0 0.0 0.05 False False 0.00/8 0.00/8 0.00/7 0.00/11 0.00/8 0.25/4 0.00/5 0.00/3 0.00/8 62509608 T A True 1 0.0 0.105 0.0 False False 0.00/7 0.00/5 0.25/4 0.10/10 0.00/4 0.00/5 0.00/4 0.00/8 62509634 G T True 6 0.8 0.565 1.0 False False 0.80/5 0.50/4 0.83/6 0.22/9 1.00/4 1.00/4 1.00/3 1.00/3 1.00/8 62509663 A T True 4 0.364 0.071 0.652 True False 0.36/11 0.00/8 0.33/6 0.00/10 0.00/4 0.57/7 1.00/3 0.33/3 0.70/10 62509692 T C True 2 0.2 0.276 0.0 False False 0.20/10 0.12/8 0.20/5 0.25/12 0.75/4 0.00/5 0.00/3 0.00/2 0.00/8 62509701 A T True 3 0.286 0.25 0.667 False False 0.29/7 0.12/8 0.40/5 0.23/13 0.50/2 0.50/2 0.50/2 0.80/5 62509703 A T True 2 0.222 0.0 0.667 True False 0.22/9 0.00/8 0.00/5 0.00/13 0.00/2 0.75/4 0.33/3 1.00/1 0.75/4 62509704 A T True 2 0.222 0.231 0.0 False False 0.22/9 0.00/7 0.40/5 0.25/12 0.50/2 0.00/5 0.00/2 0.00/1 0.00/7 62509708 T A True 4 0.444 0.214 0.857 True False 0.44/9 0.00/7 0.40/5 0.23/13 0.33/3 0.80/5 0.50/2 1.00/1 1.00/6 62509709 T A True 4 0.444 0.25 1.0 True False 0.44/9 0.14/7 0.40/5 0.23/13 0.33/3 1.00/4 1.00/2 1.00/1 1.00/6 62509710 T A True 4 0.444 0.25 1.0 True False 0.44/9 0.00/7 0.40/5 0.23/13 0.67/3 1.00/4 1.00/2 1.00/1 1.00/6 62509711 T A True 4 0.444 0.207 1.0 True False 0.44/9 0.00/8 0.40/5 0.23/13 0.33/3 1.00/4 1.00/2 1.00/1 1.00/7 62509712 T A True 4 0.444 0.207 0.929 True False 0.44/9 0.00/8 0.40/5 0.23/13 0.33/3 1.00/4 1.00/2 1.00/1 0.86/7 62509713 T A True 5 0.571 0.2 0.929 True False 0.57/7 0.00/8 0.40/5 0.23/13 0.25/4 1.00/4 1.00/2 1.00/1 0.86/7 62509714 T A True 4 0.571 0.241 0.929 True False 0.57/7 0.12/8 0.40/5 0.23/13 0.33/3 1.00/4 1.00/2 1.00/1 0.86/7 62509757 A G True 2 0.2 0.091 0.875 True False 0.20/10 0.11/9 0.20/5 0.00/13 0.17/6 1.00/6 1.00/2 0.75/8 62509779 T C True 5 0.25 0.229 0.667 False False 0.25/8 0.00/8 0.43/7 0.21/14 0.33/6 0.43/7 1.00/2 1.00/1 0.75/8 62509796 G A True 3 0.533 1.0 False True 0.67/3 0.50/6 0.50/2 0.25/4 1.00/3 1.00/3 1.00/1 1.00/5 62509799 G T True 1 0.067 0.0 False False 0.00/3 0.00/6 0.00/2 0.25/4 0.00/3 0.00/3 0.00/1 0.00/5 62509816 G T True 3 0.571 1.0 False False 1.00/3 0.57/7 0.50/2 0.00/2 1.00/3 1.00/4 1.00/1 1.00/1 1.00/4 62509831 T A True 8 0.5 0.317 0.621 False False 0.50/10 0.08/12 0.62/8 0.36/14 0.29/7 0.43/7 0.88/8 0.60/5 0.56/9 62509840 G T True 4 1.0 0.667 1.0 False False 1.00/4 0.71/7 1.00/1 0.00/2 1.00/2 1.00/4 1.00/1 1.00/2 1.00/4 62509846 G C True 1 0.0 0.083 False False 0.00/3 0.00/7 0.00/1 0.00/2 0.00/1 0.00/4 0.00/2 0.00/2 0.25/4 62509901 T C True 7 0.714 0.4 0.769 False False 0.71/7 0.22/9 0.54/13 0.40/10 0.33/3 0.62/8 0.73/11 0.83/6 0.86/14 62509949 C A True 1 0.0 0.042 0.0 False False 0.00/4 0.25/4 0.00/9 0.00/6 0.00/5 0.00/5 0.00/8 0.00/4 0.00/10 62509988 A C True 5 0.571 0.086 0.667 True False 0.57/7 0.17/6 0.07/14 0.00/10 0.20/5 0.75/4 0.62/8 0.45/11 0.90/10