Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    62504505 C>T  Pum=0.286  Qui=0.571  Rio=0.0
    62504507 C>T  Pum=0.286  Qui=0.558  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      6        1   13.0
Qui1     Qui    44.4      9        1   18.5
Qui2     Qui    50.0      6        1   18.0
Qui3     Qui     0.0     15        1   23.5
Qui4     Qui   100.0      3        1   15.5
Rio1     Rio   100.0      5        0    8.0
Rio2     Rio   100.0      3        0   11.5
Rio3     Rio   100.0      2        0    9.0
Rio4     Rio   100.0      8        0   13.0