Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 38
  seen in >= 2 oysters: 23
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 3]
    62504095 G>A  Pum=0.167  Qui=0.0  Rio=0.667
    62504216 T>A  Pum=0.25  Qui=0.226  Rio=0.784
    62504505 C>T  Pum=0.286  Qui=0.571  Rio=0.0
    62504507 C>T  Pum=0.286  Qui=0.558  Rio=0.0
    62504933 T>A  Pum=0.375  Qui=0.231  Rio=0.778
    62505000 T>A  Pum=0.25  Qui=0.152  Rio=0.667

16 CpGs in target; 13 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3     78        1    9.8
Qui1     Qui    55.4     92        2   11.3
Qui2     Qui    67.1     76        1   12.1
Qui3     Qui    47.9    146        1   15.3
Qui4     Qui    61.9     42        1    9.2
Rio1     Rio    86.7     60        0   10.5
Rio2     Rio    97.7     44        0    8.8
Rio3     Rio    84.0     25        0    5.7
Rio4     Rio    94.9     78        0    8.3