Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    62501417 C>A  Pum=0.429  Qui=0.5  Rio=0.0
    62501439 C>T  Pum=0.0  Qui=0.111  Rio=0.824
    62501458 A>G  Pum=0.182  Qui=0.114  Rio=0.882

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0   11.0
Qui1     Qui    50.0      2        0   10.0
Qui2     Qui     0.0      1        0    6.0
Qui3     Qui    75.0      4        0   12.0
Qui4     Qui              0        0    7.0
Rio1     Rio              0        0    3.0
Rio2     Rio   100.0      2        0    6.5
Rio3     Rio              0        0    5.0
Rio4     Rio   100.0      1        0    6.0