Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 75
  seen in >= 2 oysters: 32
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 2]
    62501417 C>A  Pum=0.429  Qui=0.5  Rio=0.0
    62501439 C>T  Pum=0.0  Qui=0.111  Rio=0.824
    62501458 A>G  Pum=0.182  Qui=0.114  Rio=0.882
    62501478 A>G  Pum=0.2  Qui=0.152  Rio=0.895
    62501518 T>A  Pum=0.158  Qui=0.143  Rio=0.704
    62501839 C>A  Pum=  Qui=0.2  Rio=0.824
    62501969 C>T  Pum=  Qui=0.5  Rio=0.0

10 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    64.0     25        0   10.1
Qui1     Qui    89.5     19        0    7.8
Qui2     Qui    33.3      9        0    8.1
Qui3     Qui    43.8     32        0    9.4
Qui4     Qui    66.7     15        0    8.8
Rio1     Rio    80.8     26        0    8.8
Rio2     Rio   100.0     15        0    7.1
Rio3     Rio    92.9     14        0    6.0
Rio4     Rio    75.0      8        0    5.8