Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 82
  seen in >= 2 oysters: 33
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    62500526 G>A  Pum=  Qui=0.222  Rio=0.789
    62500601 T>A  Pum=0.25  Qui=0.25  Rio=0.865
    62500687 G>T  Pum=  Qui=0.5  Rio=1.0

11 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     8.3     24        0    6.0
Qui1     Qui    21.4     28        0    5.4
Qui2     Qui    24.4     45        0    7.1
Qui3     Qui     8.3     60        0    9.1
Qui4     Qui    20.0     30        0    4.9
Rio1     Rio    55.6     72        1    9.5
Rio2     Rio    60.4     48        0    6.1
Rio3     Rio    61.8     34        2    5.6
Rio4     Rio    54.5     11        1    5.4