pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 62499001 A T True 0 0.0 0.0 0.25 False False 0.00/6 0.00/8 0.00/2 0.00/7 0.00/5 0.00/1 0.33/3 62499002 A C True 0 0.0 0.0 0.25 False False 0.00/5 0.00/8 0.00/2 0.00/8 0.00/5 0.00/1 0.33/3 62499005 A T True 0 0.0 0.04 0.4 False False 0.00/5 0.00/8 0.00/2 0.00/9 0.17/6 0.00/2 0.67/3 62499006 T C True 0 0.0 0.08 0.4 False False 0.00/5 0.12/8 0.00/2 0.00/9 0.17/6 0.50/2 0.33/3 62499007 G T True 0 0.059 0.4 False False 0.00/2 0.00/4 0.00/2 0.00/9 0.50/2 0.00/2 0.67/3 62499028 G A True 0 0.0 0.25 False True 0.00/3 0.00/2 0.00/9 0.00/2 0.33/3 0.00/1 0.50/2 0.00/2 62499044 A T True 2 0.25 0.038 0.75 True False 0.25/4 0.00/7 0.00/3 0.00/10 0.17/6 0.60/5 1.00/1 0.67/3 1.00/3 62499101 A G True 1 0.25 0.0 0.0 False False 0.25/4 0.00/8 0.00/5 0.00/13 0.00/8 0.00/7 0.00/7 0.00/3 0.00/6 62499104 A G True 1 0.25 0.0 0.0 False False 0.25/4 0.00/8 0.00/5 0.00/14 0.00/8 0.00/7 0.00/7 0.00/3 0.00/6 62499124 C G True 0 0.0 0.25 False False 0.00/3 0.00/3 0.00/1 0.00/2 0.00/1 0.00/2 1.00/1 0.00/1 62499127 C G True 0 0.0 0.0 0.25 False False 0.00/4 0.00/2 0.00/1 0.00/2 0.00/1 0.00/2 1.00/1 0.00/1 62499139 T C True 2 0.25 0.077 0.2 False False 0.25/8 0.14/7 0.00/4 0.05/19 0.11/9 0.29/7 0.14/7 0.20/5 0.17/6 62499157 A G True 1 0.0 0.026 0.111 False False 0.00/7 0.12/8 0.00/4 0.00/19 0.00/8 0.00/2 0.00/1 0.25/4 0.00/2 62499163 G A True 1 0.061 0.5 False True 0.00/3 0.00/6 0.33/3 0.00/16 0.12/8 0.33/3 1.00/1 0.40/5 0.67/3 62499166 G A True 1 0.057 0.167 False True 0.00/3 0.00/5 0.33/6 0.00/16 0.00/8 0.33/3 0.00/1 0.20/5 0.00/3 62499167 T A True 2 0.0 0.091 0.214 False False 0.00/6 0.20/10 0.33/6 0.00/19 0.00/9 0.33/3 0.00/1 0.29/7 0.00/3 62499170 A C True 4 0.714 0.38 0.0 False False 0.71/7 0.10/10 0.29/7 0.52/21 0.42/12 0.00/6 0.00/8 0.00/7 0.00/8 62499224 A T True 5 0.214 0.123 0.711 True False 0.21/14 0.15/13 0.33/9 0.00/29 0.21/14 0.33/9 1.00/7 0.60/10 0.92/12 62499262 G A True 6 0.2 0.184 0.824 True True 0.20/10 0.22/9 0.45/11 0.00/21 0.25/8 0.43/7 1.00/7 0.78/9 1.00/11 62499267 T G True 3 0.364 0.297 0.0 False False 0.36/11 0.17/12 0.21/14 0.37/27 0.36/11 0.00/10 0.00/6 0.00/9 0.00/13 62499313 C A True 1 0.333 0.571 False False 0.33/3 0.40/5 0.67/3 0.00/6 1.00/1 0.00/3 1.00/1 1.00/3 62499332 A G True 9 0.545 0.5 0.771 False False 0.55/11 0.54/13 0.69/16 0.36/28 0.57/7 0.70/10 0.80/10 1.00/6 0.67/9 62499352 C G True 1 0.0 0.125 False False 0.00/2 0.00/2 0.00/2 0.00/4 0.00/2 0.00/2 0.25/4 62499357 T A True 7 0.357 0.236 0.762 True False 0.36/14 0.27/11 0.60/15 0.00/22 0.14/7 0.36/11 1.00/12 0.67/9 1.00/10 62499444 A G True 6 0.188 0.373 0.255 False False 0.19/16 0.29/7 0.45/20 0.31/16 0.38/8 0.44/18 0.00/10 0.44/9 0.00/10 62499458 C T True 3 0.571 1.0 False True 1.00/2 0.40/5 0.75/4 0.50/2 0.67/3 1.00/4 1.00/2 1.00/1 1.00/2 62499461 G T True 1 0.0 0.023 0.0 False False 0.00/15 0.25/4 0.00/18 0.00/17 0.00/5 0.00/11 0.00/9 0.00/9 0.00/8 62499467 G C True 1 0.0 0.023 0.0 False False 0.00/15 0.25/4 0.00/17 0.00/18 0.00/4 0.00/10 0.00/9 0.00/9 0.00/10 62499470 G T True 1 0.0 0.024 0.0 False False 0.00/15 0.25/4 0.00/16 0.00/18 0.00/4 0.00/10 0.00/9 0.00/8 0.00/10 62499475 A G True 6 0.389 0.113 0.596 False False 0.39/18 0.00/9 0.27/22 0.00/24 0.14/7 0.36/14 0.78/9 0.44/9 0.80/15 62499476 A T True 8 0.5 0.194 0.723 True False 0.50/18 0.30/10 0.32/22 0.00/23 0.29/7 0.36/14 1.00/9 0.56/9 1.00/15 62499497 C A True 1 0.0 0.083 False False 0.00/3 0.00/8 0.00/4 0.00/5 0.00/3 0.00/4 0.00/3 0.00/1 0.25/4 62499507 A G True 2 0.0 0.014 0.212 False False 0.00/23 0.06/16 0.00/21 0.00/22 0.00/11 0.50/16 0.00/10 0.43/7 0.00/19 62499534 C T True 6 1.0 0.621 0.643 False True 1.00/5 0.73/11 0.50/6 0.50/8 0.75/4 0.00/4 1.00/3 0.00/1 1.00/6 62499620 T A True 1 0.0 0.0 0.125 False False 0.00/23 0.00/12 0.00/12 0.00/18 0.00/14 0.45/11 0.00/7 0.00/6 0.00/16 62499626 A G True 7 0.522 0.34 0.463 False False 0.52/23 0.45/11 0.27/11 0.22/18 0.46/13 0.09/11 0.62/8 0.29/7 0.73/15 62499647 G T True 6 0.429 0.304 0.542 False False 0.43/14 0.50/4 0.50/4 0.00/8 0.43/7 0.20/5 0.80/5 0.20/5 0.78/9 62499648 G T True 7 0.692 0.286 0.538 False False 0.69/13 0.40/5 0.50/6 0.00/8 0.33/9 0.20/5 0.67/6 0.40/5 0.70/10 62499649 G T True 7 0.769 0.429 0.536 False False 0.77/13 0.60/5 0.50/6 0.12/8 0.56/9 0.17/6 0.71/7 0.40/5 0.70/10 62499650 G T True 9 0.846 0.536 0.893 False False 0.85/13 0.60/5 0.50/6 0.29/7 0.70/10 1.00/6 0.86/7 1.00/5 0.80/10 62499658 G T True 3 0.231 0.214 0.038 False False 0.23/13 0.25/4 0.00/6 0.25/8 0.30/10 0.00/6 0.00/6 0.00/5 0.11/9 62499662 G T True 7 0.615 0.345 0.654 False False 0.62/13 0.50/4 0.57/7 0.00/8 0.40/10 0.17/6 1.00/6 0.40/5 0.89/9 62499732 A G True 4 0.353 0.157 0.528 False False 0.35/17 0.15/13 0.15/13 0.17/12 0.15/13 0.62/8 0.70/10 0.56/9 0.22/9 62499736 C A True 8 1.0 0.613 1.0 False False 1.00/7 0.90/10 0.50/6 0.29/7 0.62/8 1.00/2 1.00/4 1.00/4 1.00/7 62499758 G A True 6 0.417 0.192 0.737 True True 0.42/12 0.00/5 0.33/9 0.00/7 0.40/5 0.20/5 1.00/5 0.75/4 1.00/5 62499780 C T True 1 0.0 0.0 0.133 False True 0.00/7 0.00/11 0.00/8 0.00/6 0.00/4 1.00/1 0.00/4 0.25/4 0.00/6 62499789 T A True 2 0.071 0.25 0.0 False False 0.07/14 0.35/17 0.12/17 0.36/11 0.14/7 0.00/8 0.00/9 0.00/10 0.00/11 62499811 A G True 5 0.286 0.1 0.472 False False 0.29/14 0.06/16 0.19/16 0.00/10 0.12/8 0.43/7 0.56/9 0.50/10 0.40/10 62499845 G A True 6 0.2 0.217 0.857 True True 0.20/5 0.20/5 0.38/8 0.00/6 0.25/4 0.75/4 1.00/4 0.75/8 1.00/5 62499862 T C True 7 0.286 0.405 0.718 False False 0.29/7 0.64/11 0.45/11 0.17/6 0.22/9 0.56/9 1.00/9 0.54/13 0.88/8 62499877 A G True 5 0.111 0.152 0.649 False False 0.11/9 0.38/8 0.20/10 0.00/7 0.00/8 0.62/8 0.50/8 0.75/12 0.67/9 62499880 G T True 1 0.25 0.0 0.0 False False 0.25/4 0.00/4 0.00/5 0.00/5 0.00/3 0.00/5 0.00/4 0.00/9 0.00/6 62499881 T A True 1 0.0 0.061 0.0 False False 0.00/9 0.25/8 0.00/10 0.00/7 0.00/8 0.00/9 0.00/8 0.00/12 0.00/9 62499882 T A True 1 0.0 0.062 0.0 False False 0.00/8 0.25/8 0.00/10 0.00/6 0.00/8 0.00/9 0.00/8 0.00/12 0.00/9 62499887 T C True 4 0.375 0.156 0.2 False False 0.38/8 0.12/8 0.20/10 0.00/6 0.25/8 0.22/9 0.43/7 0.00/12 0.29/7 62499888 C A True 3 0.6 0.385 0.6 False False 0.60/5 0.33/3 0.40/5 0.40/5 0.67/3 1.00/3 0.00/3 1.00/1 62499905 A T True 5 0.0 0.103 0.633 True False 0.00/8 0.33/6 0.11/9 0.00/6 0.00/8 0.70/10 0.50/6 0.67/9 0.60/5 62499926 G A True 3 0.25 0.722 False True 0.00/3 0.67/3 0.50/4 0.00/5 0.00/4 0.43/7 1.00/3 0.80/5 1.00/3 62499929 G T True 1 0.067 0.0 False False 0.00/3 0.00/2 0.25/4 0.00/5 0.00/4 0.00/7 0.00/3 0.00/5 0.00/3 62499964 A G True 1 0.0 0.037 0.0 False False 0.00/8 0.25/4 0.00/7 0.00/8 0.00/8 0.00/12 0.00/5 0.00/9 0.00/5 62499969 C T True 1 0.0 0.077 False True 0.00/3 0.00/1 0.00/2 0.00/1 0.00/2 0.25/4 0.00/1 0.00/5 0.00/3 62499970 C T True 1 0.0 0.077 False True 0.00/3 0.00/1 0.00/2 0.00/1 0.00/2 0.25/4 0.00/1 0.00/5 0.00/3 62499975 T A True 1 0.125 0.074 0.0 False False 0.12/8 0.33/6 0.00/7 0.00/7 0.00/7 0.00/12 0.00/4 0.00/7 0.00/5 62499977 T A True 1 0.0 0.074 0.0 False False 0.00/7 0.33/6 0.00/7 0.00/7 0.00/7 0.00/12 0.00/4 0.00/7 0.00/5 62499978 A T True 1 0.0 0.0 0.111 False False 0.00/7 0.00/6 0.00/7 0.00/7 0.00/7 0.09/11 0.00/4 0.29/7 0.00/5 62499998 A T True 1 0.0 0.062 0.0 False False 0.00/6 0.25/8 0.00/8 0.00/9 0.00/7 0.00/10 0.00/4 0.00/6 0.00/4