Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 66
  seen in >= 2 oysters: 34
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 8  [CpG-destroying: 3]
    62499044 A>T  Pum=0.25  Qui=0.038  Rio=0.75
    62499224 A>T  Pum=0.214  Qui=0.123  Rio=0.711
    62499262 G>A  Pum=0.2  Qui=0.184  Rio=0.824
    62499357 T>A  Pum=0.357  Qui=0.236  Rio=0.762
    62499476 A>T  Pum=0.5  Qui=0.194  Rio=0.723
    62499758 G>A  Pum=0.417  Qui=0.192  Rio=0.737
    62499845 G>A  Pum=0.2  Qui=0.217  Rio=0.857
    62499905 A>T  Pum=0.0  Qui=0.103  Rio=0.633

13 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    55.7     97        0   14.1
Qui1     Qui    41.4     70        1   10.8
Qui2     Qui    64.4    101        0   12.0
Qui3     Qui    40.2    174        0   16.9
Qui4     Qui    53.7     82        0    9.7
Rio1     Rio    85.0     80        0    9.8
Rio2     Rio    77.0     74        0    7.7
Rio3     Rio    76.3     76        0    7.5
Rio4     Rio    76.9     78        0   10.1