Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    62495279 G>A  Pum=0.5  Qui=0.091  Rio=0.615

20 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    61.6    159        0   10.0
Qui1     Qui    29.4    119        0    9.2
Qui2     Qui    41.6     89        0    7.5
Qui3     Qui    23.6    165        0   12.7
Qui4     Qui    51.2    121        0    8.5
Rio1     Rio    82.3     96        0    6.4
Rio2     Rio    78.8     80        0    5.7
Rio3     Rio    75.0     60        0    4.3
Rio4     Rio    76.5     85        0    6.0