Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    10.5     86        0   10.0
Qui1     Qui    32.7     49        0    7.6
Qui2     Qui    26.5     83        0    8.6
Qui3     Qui    40.9     88        0    7.9
Qui4     Qui     8.9     79        0    7.8
Rio1     Rio     2.9     34        0    6.6
Rio2     Rio     1.4     72        0    7.4
Rio3     Rio     1.6     64        0    5.3
Rio4     Rio     0.5    183        0   13.8