Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 55
  seen in >= 2 oysters: 15
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    57.1     28        0    7.0
Qui1     Qui    83.8     37        0    7.1
Qui2     Qui    95.5     22        0    6.1
Qui3     Qui    50.0     24        0    6.8
Qui4     Qui    74.4     43        1    7.1
Rio1     Rio    22.2     27        0    7.2
Rio2     Rio     0.0     28        0    7.8
Rio3     Rio     0.0     38        0    5.9
Rio4     Rio     0.0     21        0    9.1