Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    51040629 T>A  Pum=0.875  Qui=0.565  Rio=0.0

23 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     43        0    4.9
Qui1     Qui    55.7     97        0    7.9
Qui2     Qui   100.0     31        0    2.9
Qui3     Qui    48.9     47        0    4.7
Qui4     Qui    39.3     61        0    5.2
Rio1     Rio    82.5     80        0    8.0
Rio2     Rio    90.9    110        0    8.6
Rio3     Rio    89.5     57        0    6.3
Rio4     Rio    91.2     80        0    6.5