Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 32
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    50508039 C>T  Pum=0.875  Qui=0.647  Rio=0.0

26 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    87.5     56        0    6.0
Qui1     Qui    23.3     30        0    5.2
Qui2     Qui     0.0     15        0    2.7
Qui3     Qui    72.7     44        0    4.4
Qui4     Qui    64.4     87        0    8.1
Rio1     Rio     0.0     41        0    4.7
Rio2     Rio     3.8     26        0    4.0
Rio3     Rio     0.0     37        0    3.1
Rio4     Rio     0.0     46        0    5.2