Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 18
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

13 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0     20        0    7.8
Qui1     Qui    66.7     18        0    5.3
Qui2     Qui    81.0     21        0    6.2
Qui3     Qui    90.5     21        1    5.5
Qui4     Qui    78.6     28        0    5.8
Rio1     Rio    71.4     14        1    6.8
Rio2     Rio    94.4     18        0    6.9
Rio3     Rio    76.5     17        1    6.0
Rio4     Rio    78.3     23        0    8.6