Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 37
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    21.1     38        1    5.0
Qui1     Qui    53.4     73        0    7.4
Qui2     Qui    87.2     78        0    5.8
Qui3     Qui    36.9     84        0    8.4
Qui4     Qui    49.1     53        0    6.0
Rio1     Rio    87.6    105        0    8.4
Rio2     Rio    85.1     47        0    5.7
Rio3     Rio    90.7    108        0    5.6
Rio4     Rio    90.2     82        0    7.1