Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    31754083 T>A  Pum=0.4  Qui=0.645  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        1   10.5
Qui1     Qui    66.7      3        1    9.0
Qui2     Qui   100.0      1        0    2.0
Qui3     Qui    66.7      3        1    6.0
Qui4     Qui    50.0      6        0   11.0
Rio1     Rio   100.0      3        0    6.5
Rio2     Rio   100.0      5        0    6.0
Rio3     Rio   100.0      2        0    5.0
Rio4     Rio   100.0      5        0    9.0