Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 76
  seen in >= 2 oysters: 16
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    31754083 T>A  Pum=0.4  Qui=0.645  Rio=0.0
    31754387 T>A  Pum=0.571  Qui=0.515  Rio=0.0
    31754453 G>T  Pum=0.75  Qui=0.722  Rio=0.0
    31754774 C>T  Pum=0.25  Qui=0.5  Rio=0.0
    31754805 C>T  Pum=  Qui=0.667  Rio=0.0

15 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0     25        1    7.1
Qui1     Qui    75.6     45        1    7.2
Qui2     Qui    88.9     18        0    4.3
Qui3     Qui    60.0     20        3    6.1
Qui4     Qui    44.1     34        2    7.2
Rio1     Rio    94.1     34        0    8.0
Rio2     Rio    92.9     56        0    6.6
Rio3     Rio    92.9     14        0    3.9
Rio4     Rio    90.9     44        0    7.5