Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 12
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0    8.0
Qui1     Qui    75.0      4        0    4.0
Qui2     Qui    22.2     18        0   25.0
Qui3     Qui    60.0     10        0   18.0
Qui4     Qui    40.0      5        0    9.0
Rio1     Rio   100.0     11        0   15.0
Rio2     Rio    84.6     13        0   17.0
Rio3     Rio   100.0      5        0    5.0
Rio4     Rio   100.0      3        0    5.5