Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    24018100 C>T  Pum=  Qui=0.5  Rio=0.0
    24018216 G>T  Pum=0.25  Qui=0.618  Rio=0.061

16 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    77.4     62        0    4.7
Qui1     Qui    50.0     58        1    4.4
Qui2     Qui    18.9    106        1    6.0
Qui3     Qui    26.6     94        1    9.1
Qui4     Qui    53.2     79        1    7.1
Rio1     Rio    80.6     98        1    9.7
Rio2     Rio    69.5    118        1    6.8
Rio3     Rio    82.5     80        0    6.1
Rio4     Rio    78.6     98        0    7.5