Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

19 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     65        0    5.2
Qui1     Qui    23.3     90        0    5.8
Qui2     Qui    16.9     89        0    5.4
Qui3     Qui    10.4     48        0    3.9
Qui4     Qui     3.2     62        0    4.3
Rio1     Rio     1.2     81        0    4.3
Rio2     Rio     0.0     67        0    4.8
Rio3     Rio     0.0     32        0    4.3
Rio4     Rio     1.1     87        0    5.2