Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 33
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

33 CpGs in target; 16 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0    128        0    5.3
Qui1     Qui    39.3    135        0    7.2
Qui2     Qui    36.7     79        0    4.2
Qui3     Qui    49.6    123        0    6.3
Qui4     Qui    40.8     98        1    6.1
Rio1     Rio     0.8    123        1    7.9
Rio2     Rio     0.7    140        0    6.2
Rio3     Rio    80.0     20        0    0.8
Rio4     Rio     1.4     69        0    3.9