Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     30        1    6.9
Qui1     Qui    27.8     54        0   10.6
Qui2     Qui    57.4     47        0    7.1
Qui3     Qui    58.2     79        0    8.9
Qui4     Qui    26.1     46        0    7.9
Rio1     Rio     0.0     34        0    5.7
Rio2     Rio     0.0     40        0    7.7
Rio3     Rio    88.5     26        0    3.4
Rio4     Rio     0.0     29        0    6.6