Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

6 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    37.5     16        0    9.3
Qui1     Qui    39.3     28        0   12.4
Qui2     Qui    34.6     26        0   13.6
Qui3     Qui    20.0     35        0   18.5
Qui4     Qui    25.9     27        0    9.4
Rio1     Rio    75.0     16        0   11.8
Rio2     Rio    65.9     41        0   15.8
Rio3     Rio    63.6     22        0   10.9
Rio4     Rio    41.4     29        0   14.6